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  "Description": "We extend existing gene enrichment tests to perform\nadverse event enrichment analysis. Unlike the continuous gene\nexpression data, adverse event data are counts. Therefore,\nadverse event data has many zeros and ties. We propose two\nenrichment tests. One is a modified Fisher's exact test based\non pre-selected significant adverse events, while the other is\nbased on a modified Kolmogorov-Smirnov statistic. We add\nCovariate adjustment to improve the analysis.\"Adverse event\nenrichment tests using VAERS\" Shuoran Li, Lili Zhao (2020)\n<doi:10.48550/arXiv.2007.02266>.",
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