Package: SynDI 0.1.0

Michael Kleinsasser

SynDI: Synthetic Data Integration

Regression inference for multiple populations by integrating summary-level data using stacked imputations. Gu, T., Taylor, J.M.G. and Mukherjee, B. (2021) A synthetic data integration framework to leverage external summary-level information from heterogeneous populations <arxiv:2106.06835>.

Authors:Tian Gu [aut], Jeremy M.G. Taylor [aut], Bhramar Mukherjee [aut], Michael Kleinsasser [cre]

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SynDI.pdf |SynDI.html✨
SynDI/json (API)

# Install 'SynDI' in R:

install.packages('SynDI', repos = c('https://umich-biostatistics.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/umich-biostatistics/syndi/issues

Datasets:

create_synthetic_example - Example data for Create.Synthetic
initial_estimates_example - Example data for Initial.estimates

On CRAN:

4.00 score 1 stars 7 scripts 166 downloads 6 exports 76 dependencies

Last updated 3 years agofrom:3a08bf51ea. Checks:1 OK, 6 NOTE. Indexed: yes.

Target	Result	Latest binary
Doc / Vignettes	OK	Jan 17 2025
R-4.5-win	NOTE	Jan 17 2025
R-4.5-linux	NOTE	Jan 17 2025
R-4.4-win	NOTE	Jan 17 2025
R-4.4-mac	NOTE	Jan 17 2025
R-4.3-win	NOTE	Jan 17 2025
R-4.3-mac	NOTE	Jan 17 2025

Exports:%>%Create.Synthetic expit Initial.estimates Resample.gamma.binaryY Resample.gamma.continuousY

Dependencies:abind arm backports bit bit64 boot broom cli clipr coda codetools cpp11 crayon dplyr evaluate fansi forcats foreach generics glmnet glue haven highr hms iterators jomo knitr lattice lifecycle lme4 magrittr MASS Matrix mice minqa mitml mvtnorm nlme nloptr nnet numDeriv ordinal pan pillar pkgconfig prettyunits progress purrr R6 randomForest rbibutils Rcpp RcppEigen Rdpack readr reformulas rlang rpart sandwich shape StackImpute stringi stringr survival tibble tidyr tidyselect tzdb ucminf utf8 vctrs vroom withr xfun yaml zoo

SynDI Example 1: Binary Response

Tian Gu

Rendered fromSynDI-example-binary.Rmdusingknitr::knitron Jan 17 2025.

Last update: 2021-07-20
Started: 2021-07-14

SynDI Example 2: Continuous Response

Tian Gu

Rendered fromSynDI-example-continuous.Rmdusingknitr::knitron Jan 17 2025.

Last update: 2021-07-20
Started: 2021-07-15

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Example data for Create.Synthetic()	create_synthetic_example
Create the synthetic data	Create.Synthetic
Expit function	expit
Example data for Initial.estimates()	initial_estimates_example
Internal estimation	Initial.estimates
Resample for bootstrap variance for binary Y	Resample.gamma.binaryY
Resample for bootstrap variance continuous Y	Resample.gamma.continuousY