Package: SynDI 0.1.0

Michael Kleinsasser

SynDI: Synthetic Data Integration

Regression inference for multiple populations by integrating summary-level data using stacked imputations. Gu, T., Taylor, J.M.G. and Mukherjee, B. (2021) A synthetic data integration framework to leverage external summary-level information from heterogeneous populations <arxiv:2106.06835>.

Authors:Tian Gu [aut], Jeremy M.G. Taylor [aut], Bhramar Mukherjee [aut], Michael Kleinsasser [cre]

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SynDI.pdf |SynDI.html✨
SynDI/json (API)

# Install 'SynDI' in R:

install.packages('SynDI', repos = c('https://umich-biostatistics.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/umich-biostatistics/syndi/issues

Datasets:

create_synthetic_example - Example data for Create.Synthetic
initial_estimates_example - Example data for Initial.estimates

On CRAN:

4.00 score 1 stars 7 scripts 155 downloads 6 exports 73 dependencies

Last updated 3 years agofrom:3a08bf51ea. Checks:OK: 1 NOTE: 6. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Nov 18 2024
R-4.5-win	NOTE	Nov 18 2024
R-4.5-linux	NOTE	Nov 18 2024
R-4.4-win	NOTE	Nov 18 2024
R-4.4-mac	NOTE	Nov 18 2024
R-4.3-win	NOTE	Nov 18 2024
R-4.3-mac	NOTE	Nov 18 2024

Exports:%>%Create.Synthetic expit Initial.estimates Resample.gamma.binaryY Resample.gamma.continuousY

Dependencies:abind arm backports bit bit64 boot broom cli clipr coda codetools cpp11 crayon dplyr evaluate fansi forcats foreach generics glmnet glue haven highr hms iterators jomo knitr lattice lifecycle lme4 magrittr MASS Matrix mice minqa mitml mvtnorm nlme nloptr nnet numDeriv ordinal pan pillar pkgconfig prettyunits progress purrr R6 randomForest Rcpp RcppEigen readr rlang rpart sandwich shape StackImpute stringi stringr survival tibble tidyr tidyselect tzdb ucminf utf8 vctrs vroom withr xfun yaml zoo

SynDI Example 1: Binary Response

Tian Gu

Rendered fromSynDI-example-binary.Rmdusingknitr::knitron Nov 18 2024.

Last update: 2021-07-20
Started: 2021-07-14

SynDI Example 2: Continuous Response

Tian Gu

Rendered fromSynDI-example-continuous.Rmdusingknitr::knitron Nov 18 2024.

Last update: 2021-07-20
Started: 2021-07-15

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Example data for Create.Synthetic()	create_synthetic_example
Create the synthetic data	Create.Synthetic
Expit function	expit
Example data for Initial.estimates()	initial_estimates_example
Internal estimation	Initial.estimates
Resample for bootstrap variance for binary Y	Resample.gamma.binaryY
Resample for bootstrap variance continuous Y	Resample.gamma.continuousY